Mir-221-P2a

MirGeneDB ID

Cpo-Mir-221-P2a

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-221

Paralogues

Cpo-Mir-221-P1a

Orthologues

Aca-Mir-221-P2a Ami-Mir-221-P2a Bta-Mir-221-P2a Cfa-Mir-221-P2a Cja-Mir-221-P2a Cli-Mir-221-P2a Cmi-Mir-221-P2a Cpi-Mir-221-P2a Dno-Mir-221-P2a Dre-Mir-221-P2a1 Dre-Mir-221-P2a2 Eca-Mir-221-P2a Ete-Mir-221-P2a Gga-Mir-221-P2a Gja-Mir-221-P2a Gmo-Mir-221-P2a1 Gmo-Mir-221-P2a2 Hsa-Mir-221-P2a Laf-Mir-221-P2a Lch-Mir-221-P2a Loc-Mir-221-P2a Mal-Mir-221-P2a1 Mal-Mir-221-P2a2 Mdo-Mir-221-P2a Mml-Mir-221-P2a Mmr-Mir-221-P2a Mmu-Mir-221-P2a Mun-Mir-221-P2a Neu-Mir-221-P2a Oan-Mir-221-P2a Ocu-Mir-221-P2a Pab-Mir-221-P2a Pbv-Mir-221-P2a Rno-Mir-221-P2a Sha-Mir-221-P2a Spt-Mir-221-P2a Sto-Mir-221-P2a Tgu-Mir-221-P2a Tni-Mir-221-P2a1 Xla-Mir-221-P2a3 Xla-Mir-221-P2a4 Xtr-Mir-221-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_33: 12035274-12035336 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-221-P2a)

Mir-221-P1a scaffold_33: 12034584-12034647 [+] UCSC
Mir-221-P2a scaffold_33: 12035274-12035336 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GGGGGCCGAACCUCCAGGUCUGGGGCAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUGAACAACAGCUACAUUGUCUGCUGGGUUUCAGGCUACCUGGAAACAUGUUCUUCACUGAC

Get precursor sequence

Structure

        10        20           30        40        50        60  
GGGGGCCGAACCUCCAGG  UG  --  A  -|   UG   U         AUUU    GUUUG 
                  UC  GG  GC UG AACC  GCA ACAAUGUAG    CUGU     U
                  AG  CC  CG AC UUGG  CGU UGUUACAUC    GACA     U
CAGUCACUUCUUGUACAA  GU  AU  G  U^   GU   C         ----    ACAAG 
 120       110       100        90        80            70