Mir-221-P2a

MirGeneDB ID

Cmi-Mir-221-P2a

Family name

MIR-221 (all species)

Seed

CCUGGCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-221-P1a Cmi-Mir-221-P1c

Orthologues

Aca-Mir-221-P2a Ami-Mir-221-P2a Bta-Mir-221-P2a Cfa-Mir-221-P2a Cja-Mir-221-P2a Cli-Mir-221-P2a Cpi-Mir-221-P2a Cpo-Mir-221-P2a Dno-Mir-221-P2a Dre-Mir-221-P2a1 Dre-Mir-221-P2a2 Eca-Mir-221-P2a Ete-Mir-221-P2a Gga-Mir-221-P2a Gja-Mir-221-P2a Gmo-Mir-221-P2a1 Gmo-Mir-221-P2a2 Hsa-Mir-221-P2a Laf-Mir-221-P2a Lch-Mir-221-P2a Loc-Mir-221-P2a Mal-Mir-221-P2a1 Mal-Mir-221-P2a2 Mdo-Mir-221-P2a Mml-Mir-221-P2a Mmr-Mir-221-P2a Mmu-Mir-221-P2a Mun-Mir-221-P2a Neu-Mir-221-P2a Oan-Mir-221-P2a Ocu-Mir-221-P2a Pab-Mir-221-P2a Pbv-Mir-221-P2a Rno-Mir-221-P2a Sha-Mir-221-P2a Spt-Mir-221-P2a Sto-Mir-221-P2a Tgu-Mir-221-P2a Tni-Mir-221-P2a1 Xla-Mir-221-P2a3 Xla-Mir-221-P2a4 Xtr-Mir-221-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635858.1: 3689867-3689927 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACAGACAAUUUUUCCCAGGCUUGGCCUGAACCUGGCAUACAAUGUAGAAUUCUGUGUUAGUACCAACAGCUACAUUGUCUGCUGGGUUUCAGACUACCUGGAACAGCAGAGAAUCACUAA

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Structure

        10            20        30         40        50        60 
GACAGACAAUUUUUCCC----|  CU   C     -  UG   U         AAUU    GUUA 
                     AGG  UGG CUGAA CC  GCA ACAAUGUAG    CUGU    G
                     UCC  AUC GACUU GG  CGU UGUUACAUC    GACA    U
AAUCACUAAGAGACGACAAGG^  --   A     U  GU   C         ----    ACCA 
 .       110       100          90        80            70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-221-P2a_5p

mirBase accession

None

Sequence

0- ACCUGGCAUACAAUGUAGAAUUCUGU -26

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Star sequence

Cmi-Mir-221-P2a_3p*

mirBase accession

None

Sequence

38- AGCUACAUUGUCUGCUGGGUUUC -61

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