Mir-221-P2a

MirGeneDB ID

Pbv-Mir-221-P2a

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-221

Paralogues

Pbv-Mir-221-P1a Pbv-Mir-221-P1c

Orthologues

Aca-Mir-221-P2a Ami-Mir-221-P2a Bta-Mir-221-P2a Cfa-Mir-221-P2a Cja-Mir-221-P2a Cli-Mir-221-P2a Cmi-Mir-221-P2a Cpi-Mir-221-P2a Cpo-Mir-221-P2a Dno-Mir-221-P2a Dre-Mir-221-P2a1 Dre-Mir-221-P2a2 Eca-Mir-221-P2a Ete-Mir-221-P2a Gga-Mir-221-P2a Gja-Mir-221-P2a Gmo-Mir-221-P2a1 Gmo-Mir-221-P2a2 Hsa-Mir-221-P2a Laf-Mir-221-P2a Lch-Mir-221-P2a Loc-Mir-221-P2a Mal-Mir-221-P2a1 Mal-Mir-221-P2a2 Mdo-Mir-221-P2a Mml-Mir-221-P2a Mmr-Mir-221-P2a Mmu-Mir-221-P2a Mun-Mir-221-P2a Neu-Mir-221-P2a Oan-Mir-221-P2a Ocu-Mir-221-P2a Pab-Mir-221-P2a Rno-Mir-221-P2a Sha-Mir-221-P2a Spt-Mir-221-P2a Sto-Mir-221-P2a Tgu-Mir-221-P2a Tni-Mir-221-P2a1 Xla-Mir-221-P2a3 Xla-Mir-221-P2a4 Xtr-Mir-221-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE954435.1: 198745-198806 [+]

Clustered miRNAs
(< 50kb from Mir-221-P2a)

Mir-221-P1a KE954435.1: 197491-197553 [+]
Mir-221-P2a KE954435.1: 198745-198806 [+]

Precursor
(pre-Mir +30nt flank)

UGAUGAAAAUGAUCCAGCCUUUGGGCCUUGACCUGGCAUACAAUGUAGAAUACUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUGUCUGGAAGUACAGUACAAAAGGA

Get precursor sequence

Structure

        10         20         30        40        50        60
UGAUGAAAAUGAUCCAG-  UUUG     U-|   UG   U         AAUACUGUGUU 
                  CC    GGCCU  GACC  GCA ACAAUGUAG           U
                  GG    UCGGA  UUGG  CGU UGUUACAUC           G
AGGAAAACAUGACAUGAA  UCUG     CU^   GU   C         GACAACGAAUU 
120       110       100        90        80        70