MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-221-P2a1

Family name MIR-221 (all species)
Seed GCUACAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-221-1
Paralogues Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Gmo-Mir-221-P2a2 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xtr-Mir-221-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig337589: 767-830 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P2a1)
Mir-221-P1a1 contig337589: 317-378 [+] UCSC Ensembl
Mir-221-P2a1 contig337589: 767-830 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGUGUCAAACGCUGUUGCUUUAUCCUGAACCUGGCAUACAAUGUAGAUAUCUGUGUUGUCCAAUUCUACAGCUACAUUGUCUGCUGGGUUUCUGGCUAGCAAUAUAAGCAGCUUUAAAUGCC
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Structure
        10            20         30        40        50        60   
GUGGUGUCAAACGCUGU----|   UUAU  U-     UG   U         AUAU    GUUGUC 
                     UGCU    CC  GAACC  GCA ACAAUGUAG    CUGU      \
                     ACGA    GG  UUUGG  CGU UGUUACAUC    GACA      C
CCGUAAAUUUCGACGAAUAUA^   UC--  UC     GU   C         ----    UCUUAA 
  120       110       100          90        80            70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-221-P2a1_5p*

mirBase accessionMIMAT0044032
Sequence
0- ACCUGGCAUACAAUGUAGAUAUCUGU -26
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Mature sequence

Gmo-Mir-221-P2a1_3p

mirBase accessionMIMAT0044022
Sequence
41- AGCUACAUUGUCUGCUGGGUUUC -64
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