MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-221-P1a2

Family name MIR-221 (all species)
Seed GCUACAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-222-1
Paralogues Gmo-Mir-221-P1a1  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Xtr-Mir-221-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 scaffold00071: 21723-21784 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUGGUGAAGACGUUCGGUGGCCAGCAGUUGCUCAGUACUCAGUGUAGAUCCUGUGGGGCAGGCAGCAGCUACAUCUGGCUACUGGGUCUCUGCUGGCGGCCAUGUCUGCACCGGANNNNN
Get precursor sequence
Structure
        10          20        30        40         50          
UGAUGGUGAAGACGUUC--   G        UU        CU   -|    AUC  GUGGG 
                   GGU GCCAGCAG  GCUCAGUA  CAG UGUAG   CU     \
                   CCG CGGUCGUC  UGGGUCAU  GUC ACAUC   GA     G
NNNNNAGGCCACGUCUGUA   G        UC        CG   U^    GAC  CGGAC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-221-P1a2_5p*
mirBase accessionMIMAT0044326
Sequence 
0- UGCUCAGUACUCAGUGUAGAUCCU -24
Get sequence
Mature sequence

Gmo-Mir-221-P1a2_3p
mirBase accessionMIMAT0044031
Sequence 
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence