MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-222a
Paralogues Mdo-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
4: 17426702-17426765 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a)
Mir-221-P1a 4: 17426702-17426765 [+] UCSC Ensembl
Mir-221-P2a 4: 17427286-17427348 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGUUCCCUCUGCCUAUUUUGUCCCUCAUUCGCUCAGUAGUCAGUGUAGAUACUGUCUCUUUCCAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUUAGAGCUUCUGUCCCAACU
Get precursor sequence
Structure
        10           20        30        40         50        60 
CGGUUCCCUCUGCCUAUUU---| U  C   UUC             -     AUACUGUCUCU 
                      UG CC UCA   GCUCAGUAGUCAG UGUAG           \
                      AC GG AGU   UGGGUCAUCGGUC ACAUC           U
UCAACCCUGUCUUCGAGAUUCU^ -  U   CUC             U     GACGACUACCU 
  120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-221-P1a_5p*

mirBase accessionMIMAT0004159
Sequence
0- CGCUCAGUAGUCAGUGUAGAUAC -23
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Proposed targets TargetScanVert: mdo-miR-222a
Mature sequence

Mdo-Mir-221-P1a_3p

mirBase accessionMIMAT0004159
Sequence
40- AGCUACAUCUGGCUACUGGGUCUC -64
Get sequence
Proposed targets TargetScanVert: mdo-miR-222a