MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-221-P1c  Lch-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127252.1: 52334-52395 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCGAUUUGAGCUUAUAGUUGUCCAUGAGUUGCUCAGUAGUCAGUGUAGAUUCUGUGUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUAAUGGCAACACAAACUUCCAGUUGGCGCC
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Structure
        10           20        30        40         50          
AUCGAUUUGAGCUUAUA---|   U    G  UU             -     AUUCUGUGUC 
                    GUUG CCAU AG  GCUCAGUAGUCAG UGUAG          \
                    CAAC GGUA UC  UGGGUCAUCGGUC ACAUC          U
CCGCGGUUGACCUUCAAACA^   -    A  UC             U     GACGACUAAC 
120       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Star sequence

Lch-Mir-221-P1a_5p* (predicted)

mirBase accessionNone
Sequence
0- UGCUCAGUAGUCAGUGUAGAUUC -23
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Mature sequence

Lch-Mir-221-P1a_3p (predicted)

mirBase accessionNone
Sequence
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence