MirGeneDB ID | Lch-Mir-221-P1a |
---|---|
Family name | MIR-221 (all species) |
Seed | GCUACAU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-221-P1c Lch-Mir-221-P2a |
Orthologues | Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cja-Mir-221-P1a1 Cja-Mir-221-P1a2 Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Gmo-Mir-221-P1a2 Hsa-Mir-221-P1a Laf-Mir-221-P1a Loc-Mir-221-P1a Mal-Mir-221-P1a1 Mal-Mir-221-P1a2 Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Neu-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xla-Mir-221-P1a3 Xla-Mir-221-P1a4 Xtr-Mir-221-P1a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH127252.1: 52334-52395 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AUCGAUUUGAGCUUAUAGUUGUCCAUGAGUUGCUCAGUAGUCAGUGUAGAUUCUGUGUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUAAUGGCAACACAAACUUCCAGUUGGCGCCGet precursor sequence |
Structure | 10 20 30 40 50 AUCGAUUUGAGCUUAUA---| U G UU - AUUCUGUGUC GUUG CCAU AG GCUCAGUAGUCAG UGUAG \ CAAC GGUA UC UGGGUCAUCGGUC ACAUC U CCGCGGUUGACCUUCAAACA^ - A UC U GACGACUAAC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Star sequence | Lch-Mir-221-P1a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UGCUCAGUAGUCAGUGUAGAUUC -23
Get sequence
|
Mature sequence | Lch-Mir-221-P1a_3p (predicted) |
mirBase accession | None |
Sequence |
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence
|