| MirGeneDB ID | Lch-Mir-221-P1c |
|---|---|
| Family name | MIR-221 (all species) |
| Seed | GCUACAU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-221-P1a Lch-Mir-221-P2a |
| Orthologues | Aca-Mir-221-P1c Ami-Mir-221-P1c Cli-Mir-221-P1c Cmi-Mir-221-P1c Cpi-Mir-221-P1c Dre-Mir-221-P1c Gga-Mir-221-P1c Gja-Mir-221-P1c Loc-Mir-221-P1c Mun-Mir-221-P1c Oan-Mir-221-P1c Pbv-Mir-221-P1c Spt-Mir-221-P1c Sto-Mir-221-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126781.1: 1065197-1065261 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CUAGCACCUGGAUAUUGGAUGCUUGUUGGCCGCUCAGUACUCAGUGUAGAGUCUGUCUGACAUUAAUAAACAGCUACAUCUGAUUACUGGGUCACUAGCAGCAUCCCCAAGCAGCUGCUCAGGAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUAGCACCUGGAUAUUG---| U CC C - AGUCUGUCUGA GAUGCU GUUGG GCUCAGUA UCAG UGUAG C CUACGA CGAUC UGGGUCAU AGUC ACAUC A UAGGACUCGUCGACGAACCC^ - AC U U GACAAAUAAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-221-P1c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CGCUCAGUACUCAGUGUAGAGUCU -24
Get sequence
|
| Mature sequence | Lch-Mir-221-P1c_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- AGCUACAUCUGAUUACUGGGUCAC -65
Get sequence
|
