MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-221-P1c

Family name MIR-221 (all species)
Seed GCUACAU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-222b
Paralogues Ami-Mir-221-P1a  Ami-Mir-221-P2a 
Orthologues Aca-Mir-221-P1c  Cli-Mir-221-P1c  Cmi-Mir-221-P1c  Cpi-Mir-221-P1c  Dre-Mir-221-P1c  Gga-Mir-221-P1c  Gja-Mir-221-P1c  Lch-Mir-221-P1c  Loc-Mir-221-P1c  Mun-Mir-221-P1c  Oan-Mir-221-P1c  Pbv-Mir-221-P1c  Spt-Mir-221-P1c  Sto-Mir-221-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708049.1: 5891729-5891795 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGAAGCAGGAGAGACUGGAUGUAAUUGGGUGCUCAGUAGUCGGUGUAGAAUCUGUCUGACAUUGAUACCAACAGCUACAUCUGAUUACUGGGUCACUAAUUGCAUCAUCAAACUGCAGCCUACUGA
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Structure
        10          20        30        40         50        60  
GAGAAGCAGGAGAGACUG--           GU             -|    AAUCUGUCUGAC 
                    GAUGUAAUUGG  GCUCAGUAGUCGG UGUAG            A
                    CUACGUUAAUC  UGGGUCAUUAGUC ACAUC            U
AGUCAUCCGACGUCAAACUA           AC             U^    GACAACCAUAGU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Ami-Mir-221-P1c_5p*
mirBase accessionMIMAT0038256
Sequence 
0- UGCUCAGUAGUCGGUGUAGAAUC -23
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Mature sequence

Ami-Mir-221-P1c_3p
mirBase accessionMIMAT0038257
Sequence 
43- AGCUACAUCUGAUUACUGGGUCAC -67
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