MirGeneDB ID | Cli-Mir-221-P1c |
Family name |
MIR-221 (all species) |
Seed |
GCUACAU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-222b
|
Paralogues |
Cli-Mir-221-P1a
Cli-Mir-221-P2a
|
Orthologues |
Aca-Mir-221-P1c
Ami-Mir-221-P1c
Cmi-Mir-221-P1c
Cpi-Mir-221-P1c
Dre-Mir-221-P1c
Gga-Mir-221-P1c
Gja-Mir-221-P1c
Lch-Mir-221-P1c
Loc-Mir-221-P1c
Mun-Mir-221-P1c
Oan-Mir-221-P1c
Pbv-Mir-221-P1c
Spt-Mir-221-P1c
Sto-Mir-221-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold72: 1257573-1257639 [+]
|
Precursor (pre-Mir +30nt flank) |
AGACCCCACGGAGACAAUGGUGCUCUUGGCUGCUCAGUAGUCGGUGUAGGAUCUGUCUGACAGUCUCGCUAACAGCUACAUCUGAUUACUGGGUCACCAAAGGGUGACCACACUGCACCCACAGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGACCCCACGGAGACAAU - - CU -| GAUCUGUCUGAC
GGU GCUC UUGG GCUCAGUAGUCGG UGUAG A
CCA UGGG AACC UGGGUCAUUAGUC ACAUC G
GAGGACACCCACGUCACA G A AC U^ GACAAUCGCUCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Cli-Mir-221-P1c_5p* |
mirBase accession | None |
Sequence |
0- UGCUCAGUAGUCGGUGUAGGAUC -23
Get sequence
|
Mature sequence |
Cli-Mir-221-P1c_3p |
mirBase accession | MIMAT0038608 |
Sequence |
43- AGCUACAUCUGAUUACUGGGUCAC -67
Get sequence
|