MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-221-P1c

Family name MIR-221 (all species)
Seed GCUACAU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-222b
Paralogues Dre-Mir-221-P1a1  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2 
Orthologues Aca-Mir-221-P1c  Ami-Mir-221-P1c  Cli-Mir-221-P1c  Cmi-Mir-221-P1c  Cpi-Mir-221-P1c  Gga-Mir-221-P1c  Gja-Mir-221-P1c  Lch-Mir-221-P1c  Loc-Mir-221-P1c  Mun-Mir-221-P1c  Oan-Mir-221-P1c  Pbv-Mir-221-P1c  Spt-Mir-221-P1c  Sto-Mir-221-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr21: 44568190-44568252 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGUGUGCUGACAUGACGUGAUCUGCAGACUCAGUACUCGGUGUAGAGUCUGUGUGAUUCAGAAGAGCAGCUACAUCUGAAUACUGGGUCAGUGGAGACGUCACACGCUACCCGCACACAC
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Structure
        10           20        30        40         50        60
GUGUGUGUGCUGACAUG---|   GA  UG A         C    -     AGUCUGUGUGA 
                    ACGU  UC  C GACUCAGUA UCGG UGUAG           U
                    UGCA  AG  G CUGGGUCAU AGUC ACAUC           U
CACACACGCCCAUCGCACAC^   G-  GU A         A    U     GACGAGAAGAC 
 120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-221-P1c_5p*

mirBase accessionNone
Sequence
0- ACUCAGUACUCGGUGUAGAGUC -22
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Mature sequence

Dre-Mir-221-P1c_3p

mirBase accessionMIMAT0011303
Sequence
40- AGCUACAUCUGAAUACUGGGUCA -63
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Proposed targets TargetScanFish: dre-miR-222b