MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-221-P1a1

Family name MIR-221 (all species)
Seed GCUCAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-222a
Paralogues Dre-Mir-221-P1b  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Hsa-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xtr-Mir-221-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr9: 33921481-33921542 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a1)
Mir-221-P2a1 chr9: 33920955-33921017 [-] UCSC Ensembl
Mir-221-P1a1 chr9: 33921481-33921542 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCGGUGGCUUGUUCGGGUGCUCAUGAGAUGCUCAGUAGUCAGUGUAGAUCCUGUGUCACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUUUUCUGCUUCCUGUUGGCACA
Get precursor sequence
Structure
        10           20        30        40         50          
UGCCGGUGGCUUGUUCG---|    U   G   U             -     AUCCUGUGUC 
                    GGUGC CAU AGA GCUCAGUAGUCAG UGUAG          \
                    UUACG GUA UCU UGGGUCAUCGGUC ACAUC          A
ACACGGUUGUCCUUCGUCUU^    -   G   C             U     GACGACUAAC 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-221-P1a1_5p

mirBase accessionMIMAT0031927
Sequence
0- UGCUCAGUAGUCAGUGUAGAUCC -23
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Co-mature sequence

Dre-Mir-221-P1a1_3p

mirBase accessionMIMAT0001289
Sequence
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence
Proposed targets TargetScanFish: dre-miR-222