MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-222a
Paralogues Oan-Mir-221-P1c  Oan-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041745.1: 8659576-8659637 [+]
Clustered miRNAs
(< 50kb from Mir-221-P1a)
Mir-221-P1a NC_041745.1: 8659576-8659637 [+]
Mir-221-P2a NC_041745.1: 8660201-8660263 [+]
Precursor
(pre-Mir +30nt flank)
CCUCCAGAGAGCCUGUAGUUGCCCCUCAAUCGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAGGGUACCUUCUAGCUUCUCUCUCGGGA
Get precursor sequence
Structure
        10        20          30        40         50          
CCUCCAGAGAGCCUGUAGUUGC--      AUC             -|    AUCCUGUAUU 
                        CCCUCA   GCUCAGUAGUCAG UGUAG          \
                        GGGAGU   UGGGUCAUCGGUC ACAUC          C
AGGGCUCUCUCUUCGAUCUUCCAU      CUC             U^    GACGACUAAU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-221-P1a_5p*

mirBase accessionMIMAT0007132
Sequence
0- CGCUCAGUAGUCAGUGUAGAUCC -23
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Mature sequence

Oan-Mir-221-P1a_3p

mirBase accessionMIMAT0007133
Sequence
38- AGCUACAUCUGGCUACUGGGUCUC -62
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