MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUCAGU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-221-P1c  Cmi-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635858.1: 3691581-3691641 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAAGCCUUACUCCUUGAUGUCCAUCAAUUGCUCAGUAGUCAGUGUAGAUCCUGUCUCCAUUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGCCAUCACGCUUCCUCUUGAUUUUCA
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Structure
        10           20        30        40         50         
GAAAAGCCUUACUCCUU---|   UC     AUU             -     AUCCUGUCU 
                    GAUG  CAUCA   GCUCAGUAGUCAG UGUAG         C
                    CUAC  GUAGU   UGGGUCAUCGGUC ACAUC         C
ACUUUUAGUUCUCCUUCGCA^   C-     CUC             U     GACGACUUA 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-221-P1a_5p
mirBase accessionNone
Sequence 
0- UGCUCAGUAGUCAGUGUAGAUCC -23
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Co-mature sequence

Cmi-Mir-221-P1a_3p
mirBase accessionNone
Sequence 
37- AGCUACAUCUGGCUACUGGGUCUC -61
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