MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-221-P1a1

Family name MIR-221 (all species)
Seed GCUACAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-222-2
Paralogues Gmo-Mir-221-P1a2  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xtr-Mir-221-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig337589: 317-378 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a1)
Mir-221-P1a1 contig337589: 317-378 [+] UCSC Ensembl
Mir-221-P2a1 contig337589: 767-830 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGUCCCGCUGCCUCUCGGCGCUGUCAGUUGCUCAGUAGGCAGUGUAGAUCCUGUUUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAAGGCGCUGCCCACUUCCUGGGGAGCAU
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Structure
        10          20        30        40         50          
CGUGUCCCGCUGCCUCU--       G    UU         G   -|    AUC  GUUUA 
                   CGGCGCU UCAG  GCUCAGUAG CAG UGUAG   CU     \
                   GUCGCGG AGUC  UGGGUCAUC GUC ACAUC   GA     G
UACGAGGGGUCCUUCACCC       A    UC         G   U^    GAC  CUAAC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-221-P1a1_5p*

mirBase accessionMIMAT0044030
Sequence
0- UGCUCAGUAGGCAGUGUAGAUCCU -24
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Mature sequence

Gmo-Mir-221-P1a1_3p

mirBase accessionMIMAT0044031
Sequence
38- AGCUACAUCUGGCUACUGGGUCUC -62
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