MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-221-P1a1

Family name MIR-221 (all species)
Seed GCUACAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-222
Paralogues Tni-Mir-221-P2a1 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Xtr-Mir-221-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
CAAE01017358.1_SCAF17358: 560-621 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a1)
Mir-221-P2a1 CAAE01017358.1_SCAF17358: 254-317 [-] UCSC Ensembl
Mir-221-P1a1 CAAE01017358.1_SCAF17358: 560-621 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGAUCACUAAUGUGUGCCUUCUGCCAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGACAGCUUUGCCUACUUCCAGCCUGACAA
Get precursor sequence
Structure
        10         20         30        40         50          
CAGGAUCACUAAUGUGU-  CUU-   C   UU         G   -|    AUCCUGUGUA 
                  GC    CUG CAG  GCUCAGUAG CAG UGUAG          \
                  CG    GAC GUC  UGGGUCAUC GUC ACAUC          G
AACAGUCCGACCUUCAUC  UUUC   A   UC         G   U^    GACGACUAAC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archives.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-221-P1a1_5p*

mirBase accessionNone
Sequence
0- UGCUCAGUAGGCAGUGUAGAUCC -23
Get sequence
Mature sequence

Tni-Mir-221-P1a1_3p

mirBase accessionMIMAT0002905
Sequence
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence