MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-221-P2a1

Family name MIR-221 (all species)
Seed GCUACAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-221
Paralogues Tni-Mir-221-P1a1 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Hsa-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Xtr-Mir-221-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
CAAE01017358.1_SCAF17358: 254-317 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P2a1)
Mir-221-P2a1 CAAE01017358.1_SCAF17358: 254-317 [-] UCSC Ensembl
Mir-221-P1a1 CAAE01017358.1_SCAF17358: 560-621 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUUCUCUGGUGUCUUUGACUCUUCCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCGGGAUAGCAAUAUUAACACCUCCUUAUUUA
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Structure
        10            20        30         40        50        60   
UGCUUCUCUGGUGUCUU----| A  CU       -  UG   U         AUUU    GUGCUU 
                     UG CU  UCCUGAA CC  GCA ACAAUGUAG    CUGU      \
                     AC GA  AGGGCUU GG  CGU UGUUACAUC    GACA      G
AUUUAUUCCUCCACAAUUAUA^ -  U-       U  GU   C         ----    UCUUAG 
  120       110        100         90        80            70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-221-P2a1_5p*

mirBase accessionNone
Sequence
0- ACCUGGCAUACAAUGUAGAUUUCUGU -26
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Mature sequence

Tni-Mir-221-P2a1_3p

mirBase accessionMIMAT0002907
Sequence
41- AGCUACAUUGUCUGCUGGGUUUC -64
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