MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-221-P1a  Lch-Mir-221-P1c 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127252.1: 53102-53164 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGAGGCUUAUCCAGGUCUUGGGCAUGAACCUGGCAUACAAUGUAGAAUCCUGUGUUAGAAUAGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUACCUGGAAGUGCAUAUGGACUGUGA
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Structure
        10        20           30        40        50        60
GAGGGAGGCUUAUCCAGG   UG--   A  -|   UG   U         AAUCCUGUGUU 
                  UCU    GGC UG AACC  GCA ACAAUGUAG           A
                  AGG    UCG AC UUGG  CGU UGUUACAUC           G
AGUGUCAGGUAUACGUGA   UCCA   G  U^   GU   C         GACAACGAUAA 
 120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-221-P2a_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCUGGCAUACAAUGUAGAAUC -22
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Mature sequence

Lch-Mir-221-P2a_3p (predicted)

mirBase accessionNone
Sequence
40- AGCUACAUUGUCUGCUGGGUUUC -63
Get sequence