MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-221
Paralogues Xtr-Mir-221-P1a 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 68930823-68930885 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P2a)
Mir-221-P1a chr2: 68930297-68930358 [+] UCSC Ensembl
Mir-221-P2a chr2: 68930823-68930885 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAGAGGACUACCCAGACUUUGGCGUGCACCUGGCAUACAAUGUAGAAAACUGUGUUUGCAAAGCAACAGCUACAUUGUCUGCUGGGUUUCAUGCUGAAUGGAGAUACUCGUCCAUACAUA
Get precursor sequence
Structure
        10        20          30         40        50        60  
AAAAAGAGGACUACCCAGAC--  UG     C-|  UG   U         AAAA    GUUUG 
                      UU  GCGUG  ACC  GCA ACAAUGUAG    CUGU     C
                      AA  CGUAC  UGG  CGU UGUUACAUC    GACA     A
AUACAUACCUGCUCAUAGAGGU  GU     UU^  GU   C         ----    ACGAA 
 120       110       100        90        80            70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
An Br Em Em He Ve
Star sequence

Xtr-Mir-221-P2a_5p*

mirBase accessionNone
Sequence
0- ACCUGGCAUACAAUGUAGAAAACUGU -26
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Mature sequence

Xtr-Mir-221-P2a_3p

mirBase accessionMIMAT0003700
Sequence
40- AGCUACAUUGUCUGCUGGGUUUC -63
Get sequence
Proposed targets TargetScanVert: xtr-miR-221