MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species Horse (Equus caballus)
MiRBase ID eca-mir-221
Paralogues Eca-Mir-221-P1a 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 38513919-38513982 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P2a)		 Mir-221-P2a CM009179.1: 38513919-38513982 [-] UCSC Ensembl
Mir-221-P1a CM009179.1: 38514693-38514756 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAGGCCCAACAUCCAGGUCUGGGGCAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUCUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUACCUGGAAACAUGUUCUCCAAGGCC
Get precursor sequence
Structure
        10        20          30         40        50        60 
UGCAGGCCCAACAUCCAGG  UG  --  A  -|   UG   U         AUUUCUGUGUU 
                   UC  GG  GC UG AACC  GCA ACAAUGUAG           U
                   AG  CC  CG AC UUGG  CGU UGUUACAUC           C
CCGGAACCUCUUGUACAA-  GU  AU  G  U^   GU   C         GACAACGGGUU 
  120       110        100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-221-P2a_5p*
mirBase accessionNone
Sequence 
0- AACCUGGCAUACAAUGUAGAUUU -23
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Mature sequence

Eca-Mir-221-P2a_3p
mirBase accessionMIMAT0013203
Sequence 
41- AGCUACAUUGUCUGCUGGGUUUC -64
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