Mir-221-P2a

MirGeneDB ID

Mmu-Mir-221-P2a

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-221

Paralogues

Mmu-Mir-221-P1a

Orthologues

Aca-Mir-221-P2a Ami-Mir-221-P2a Bta-Mir-221-P2a Cfa-Mir-221-P2a Cli-Mir-221-P2a Cmi-Mir-221-P2a Cpi-Mir-221-P2a Cpo-Mir-221-P2a Dno-Mir-221-P2a Dre-Mir-221-P2a1 Dre-Mir-221-P2a2 Ete-Mir-221-P2a Gga-Mir-221-P2a Gja-Mir-221-P2a Gmo-Mir-221-P2a1 Gmo-Mir-221-P2a2 Hsa-Mir-221-P2a Lch-Mir-221-P2a Loc-Mir-221-P2a Mal-Mir-221-P2a1 Mal-Mir-221-P2a2 Mdo-Mir-221-P2a Mml-Mir-221-P2a Mun-Mir-221-P2a Oan-Mir-221-P2a Ocu-Mir-221-P2a Pbv-Mir-221-P2a Rno-Mir-221-P2a Sha-Mir-221-P2a Spt-Mir-221-P2a Sto-Mir-221-P2a Tgu-Mir-221-P2a Tni-Mir-221-P2a1 Xla-Mir-221-P2a3 Xla-Mir-221-P2a4 Xtr-Mir-221-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chrX: 19146307-19146369 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-221-P2a)

Mir-221-P2a chrX: 19146307-19146369 [-] UCSC Ensembl
Mir-221-P1a chrX: 19146900-19146963 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGGCUGAACAUCCAGGUCUGGGGCAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUACCUGGAAUCAUUUCUUCAUUGGCC

Get precursor sequence

Structure

        10        20           30        40        50        60  
GCAGGCUGAACAUCCAGG  UG  --  A  -|   UG   U         AUUU    GUUUG 
                  UC  GG  GC UG AACC  GCA ACAAUGUAG    CUGU     U
                  AG  CC  CG AC UUGG  CGU UGUUACAUC    GACA     U
CCGGUUACUUCUUUACUA  GU  AU  G  U^   GU   C         ----    ACGGA 
 120       110       100        90        80            70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

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Star sequence

Mmu-Mir-221-P2a_5p*

mirBase accession

MIMAT0017060

Sequence

0- ACCUGGCAUACAAUGUAGAUUUCUGU -26

Get sequence

Proposed targets

TargetScanVert: mmu-miR-221-5p
miRDB: MIMAT0017060

Mature sequence

Mmu-Mir-221-P2a_3p

mirBase accession

MIMAT0000669

Sequence

40- AGCUACAUUGUCUGCUGGGUUUC -63

Get sequence

Proposed targets

microrna.org: MIMAT0000669
TargetScanVert: mmu-miR-221-3p
miRDB: MIMAT0000669