| MirGeneDB ID | Laf-Mir-221-P1a |
|---|---|
| Family name | MIR-221 (all species) |
| Seed | GCUACAU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-221-P2a |
| Orthologues | Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cja-Mir-221-P1a1 Cja-Mir-221-P1a2 Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Gmo-Mir-221-P1a2 Hsa-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mal-Mir-221-P1a1 Mal-Mir-221-P1a2 Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Neu-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xla-Mir-221-P1a3 Xla-Mir-221-P1a4 Xtr-Mir-221-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010083.1: 5382008-5382071 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUGUGCUGGAAUGUGUAGUUGCCCCUCAAUGGCUCAGUAGCUAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUCCUAGCUUCUGUCACAGUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUGUGCUGGAAUGUGUA---|U CC AU - AUCCUGUCUUU G UGCC UCA GGCUCAGUAGCUAG UGUAG \ C ACGG AGU CUGGGUCAUCGGUC ACAUC U GUGACACUGUCUUCGAUCCU^U U- CU U GACGACUAAUG 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Drosha cut +2 on the 5p arm. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Laf-Mir-221-P1a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGCUCAGUAGCUAGUGUAGAUCC -23
Get sequence
|
| Mature sequence | Laf-Mir-221-P1a_3p |
| mirBase accession | None |
| Sequence |
40- AGCUACAUCUGGCUACUGGGUCUC -64
Get sequence
|
