Mir-221-P1a2

MirGeneDB ID

Mal-Mir-221-P1a2

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-221-P1a1 Mal-Mir-221-P2a1 Mal-Mir-221-P2a2

Orthologues

Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cja-Mir-221-P1a2 Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a2 Hsa-Mir-221-P1a Laf-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Neu-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Xtr-Mir-221-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884973.1: 417174-417235 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCUCAGACCUGCACAGGCCCCCCAGCGGCUGCUCAGUAGUCAGUGUAGAUCCUGUGGGGCUGGCAGCAGCUACAUCUGGCUACUGGGUCUCUGCUGGCAGCCAUGUUUUGCCGAACACAUG

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Structure

        10           20        30        40         50          
GGCUCAGACCUGCACAG---| CCC       CU             -     AUCCUGUGGG 
                    GC   CCAGCGG  GCUCAGUAGUCAG UGUAG          \
                    CG   GGUCGUC  UGGGUCAUCGGUC ACAUC          G
GUACACAAGCCGUUUUGUAC^ AC-       UC             U     GACGACGGUC 
120       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-221-P1a2_5p*

mirBase accession

None

Sequence

0- UGCUCAGUAGUCAGUGUAGAUCC -23

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Mature sequence

Mal-Mir-221-P1a2_3p

mirBase accession

None

Sequence

38- AGCUACAUCUGGCUACUGGGUCUC -62

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