MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-221-P1a2

Family name MIR-221 (all species)
Seed GCUACAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-221-P1a1  Cja-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Xtr-Mir-221-P1a 
Node of Origin (locus) C. jacchus
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021931.1: 25218553-25218616 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGCAAUCUCACAUUAAGACAGCAAGGAAGGCUCAGCAGCCAAUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCAAAAAUGAAAAUAAAAAAAAGACGGCAAGG
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Structure
        10        20           30        40         50        60 
GUGGCAAUCUCACAUUAAGA---| GCAAG  A       C     -      AUCCUGUCUUU 
                       CA     GA GGCUCAG AGCCA AUGUAG           \
                       GU     CU CUGGGUC UCGGU UACAUC           U
GGAACGGCAGAAAAAAAAUAAAA^ AAAAA  -       A     C      GAUGACUAAUG 
  120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Cja-Mir-221-P1a2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGCUCAGCAGCCAAUGUAGAUCC -23
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Mature sequence

Cja-Mir-221-P1a2_3p
mirBase accessionNone
Sequence 
40- AGCUACAUCUGGCUACUGGGUCUC -64
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