MirGeneDB ID | Gja-Mir-221-P1c |
Family name |
MIR-221 (all species) |
Seed |
GCUACAU |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-221-P1a
Gja-Mir-221-P2a
|
Orthologues |
Aca-Mir-221-P1c
Ami-Mir-221-P1c
Cli-Mir-221-P1c
Cmi-Mir-221-P1c
Cpi-Mir-221-P1c
Dre-Mir-221-P1c
Gga-Mir-221-P1c
Lch-Mir-221-P1c
Loc-Mir-221-P1c
Mun-Mir-221-P1c
Oan-Mir-221-P1c
Pbv-Mir-221-P1c
Spt-Mir-221-P1c
Sto-Mir-221-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015224181.1: 293-356 [+]
|
Precursor (pre-Mir +30nt flank) |
AGAAGCAUUCAAGAUCUGAUGUGCGCGGGCUGCUCAGUAGUCAGUGUAGGAUCUGUCUGACCACACGAACAGCUACAUCUGAUUACUGGGUCUCCUGCGCCAUCACCGCCCACAGUCCCCAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAAGCAUUCAAGAUCU---| U CU - GAU CUGAC
GAUG GCGCGGG GCUCAGUAGUCAG UGUAG CUGU C
CUAC CGCGUCC UGGGUCAUUAGUC ACAUC GACA A
GAAACCCCUGACACCCGCCA^ - UC U --- AGCAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gja-Mir-221-P1c_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UGCUCAGUAGUCAGUGUAGGAUCUGU -26
Get sequence
|
Mature sequence |
Gja-Mir-221-P1c_3p (predicted) |
mirBase accession | None |
Sequence |
40- AGCUACAUCUGAUUACUGGGUCUC -64
Get sequence
|