MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-221-P1c

Family name MIR-221 (all species)
Seed GCUACAU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-221-P1a  Gja-Mir-221-P2a 
Orthologues Aca-Mir-221-P1c  Ami-Mir-221-P1c  Cli-Mir-221-P1c  Cmi-Mir-221-P1c  Cpi-Mir-221-P1c  Dre-Mir-221-P1c  Gga-Mir-221-P1c  Lch-Mir-221-P1c  Loc-Mir-221-P1c  Mun-Mir-221-P1c  Oan-Mir-221-P1c  Pbv-Mir-221-P1c  Spt-Mir-221-P1c  Sto-Mir-221-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015224181.1: 293-356 [+]
Precursor
(pre-Mir +30nt flank)
AGAAGCAUUCAAGAUCUGAUGUGCGCGGGCUGCUCAGUAGUCAGUGUAGGAUCUGUCUGACCACACGAACAGCUACAUCUGAUUACUGGGUCUCCUGCGCCAUCACCGCCCACAGUCCCCAAAG
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Structure
        10           20        30        40         50        60  
AGAAGCAUUCAAGAUCU---|   U       CU             -     GAU    CUGAC 
                    GAUG GCGCGGG  GCUCAGUAGUCAG UGUAG   CUGU     C
                    CUAC CGCGUCC  UGGGUCAUUAGUC ACAUC   GACA     A
GAAACCCCUGACACCCGCCA^   -       UC             U     ---    AGCAC 
  120       110        100        90        80           70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-221-P1c_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGCUCAGUAGUCAGUGUAGGAUCUGU -26
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Mature sequence

Gja-Mir-221-P1c_3p (predicted)
mirBase accessionNone
Sequence 
40- AGCUACAUCUGAUUACUGGGUCUC -64
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