| MirGeneDB ID | Bta-Mir-342 |
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| Family name |
MIR-342 (all species) |
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| Seed |
CUCACAC |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-342
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| Paralogues |
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| Orthologues |
Cfa-Mir-342
Cja-Mir-342
Cpo-Mir-342
Dno-Mir-342
Eca-Mir-342
Ete-Mir-342
Hsa-Mir-342
Laf-Mir-342
Mml-Mir-342
Mmr-Mir-342
Mmu-Mir-342
Ocu-Mir-342
Pab-Mir-342
Rno-Mir-342
|
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037348.1: 65057665-65057730 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCAGCAGCCUGUGGAAGCGGGUGCGAGGCGAGGGGUGCUAUCUGUGGUUGAGGACACGGCAAAUGAAACUGUCUCACACAGAAAUCGCACCCAUCUCCUCGGCCCGCCUUGCACCACGCAGACGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCAGCAGCCUGUGGAAG--- G C G UA--| GU G CGGCAA
CGGGU CGAGG GA GGGUGC UCUGUG UGAG ACA \
GCCCG GCUCC CU CCCACG AGACAC ACUC UGU A
GGGCAGACGCACCACGUUCC - U A CUAA^ -- - CAAAGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -4 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-342_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGGUGCUAUCUGUGGUUGAGGACA -26
Get sequence
|
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| Mature sequence |
Bta-Mir-342_3p |
| mirBase accession | MIMAT0003846 |
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| Sequence |
41- UCUCACACAGAAAUCGCACCCAUCU -66
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-342
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