MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-342

Family name MIR-342 (all species)
Seed CUCACAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-342
Paralogues
Orthologues Bta-Mir-342  Cfa-Mir-342  Cja-Mir-342  Cpo-Mir-342  Dno-Mir-342  Eca-Mir-342  Ete-Mir-342  Hsa-Mir-342  Laf-Mir-342  Mml-Mir-342  Mmr-Mir-342  Mmu-Mir-342  Ocu-Mir-342  Pab-Mir-342 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr6: 132561187-132561253 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUCACCUGUGAAAAUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUCAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUGCUGAGCACCACCCCGAACCA
Get precursor sequence
Structure
        10           20        30        40          50        60    
UUUGUCACCUGUGAAAAU---    U        G      UA--|     AUUGA      UGGUCA 
                     GGGC CAAGGUGA GGGUGC    UCUGUG     GGGACA      \
                     UCCG GUUCCACU CCCACG    AGACAC     CUCUGU      A
ACCAAGCCCCACCACGAGUCG    -        G      CUAA^     A----      UAAGGU 
     120       110        100        90        80            70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut is supported by CAGE data (de Rie et al. 2017) although there is a second Drosha cut +1 on both the 5p and 3p arms and a second Dicer cut -4 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-342_5p*
mirBase accessionMIMAT0004652
Sequence 
0- AGGGGUGCUAUCUGUGAUUGAGGGACA -27
Get sequence
Proposed targets microrna.org: MIMAT0004652
TargetScanVert: rno-miR-342-5p
miRDB: MIMAT0004652
Mature sequence

Rno-Mir-342_3p
mirBase accessionMIMAT0000589
Sequence 
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence
Proposed targets microrna.org: MIMAT0000589
TargetScanVert: rno-miR-342-3p
miRDB: MIMAT0000589