| MirGeneDB ID | Cja-Mir-342 |
|---|---|
| Family name | MIR-342 (all species) |
| Seed | CUCACAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-342 Cfa-Mir-342 Cpo-Mir-342 Dno-Mir-342 Eca-Mir-342 Ete-Mir-342 Hsa-Mir-342 Laf-Mir-342 Mml-Mir-342 Mmr-Mir-342 Mmu-Mir-342 Ocu-Mir-342 Pab-Mir-342 Rno-Mir-342 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 130940190-130940256 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAGCAGCCUGUGAAACUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUUAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUGCUUAUCACCACCCUAAACAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCAGCAGCCUGUGAAACU--- U G UA--| AU GACAUGGUU GGGC CAAGGUGA GGGUGC UCUGUG UGAGG \ UCCG GUUCCACU CCCACG AGACAC ACUCU A GACAAAUCCCACCACUAUUCG - G CUAA^ -- GUUAAGGUA 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | The Drosha cut is supported by CAGE data (de Rie et al. 2017) although there is a second Drosha cut +1 on both arms and a second Dicer cut -4 on the 5p arm. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-342_5p* |
| mirBase accession | None |
| Sequence |
0- AGGGGUGCUAUCUGUGAUUGAGGGA -25
Get sequence
|
| Mature sequence | Cja-Mir-342_3p |
| mirBase accession | None |
| Sequence |
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence
|
