MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-342

Family name MIR-342 (all species)
Seed CUCACAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-342  Cfa-Mir-342  Cpo-Mir-342  Dno-Mir-342  Eca-Mir-342  Ete-Mir-342  Hsa-Mir-342  Laf-Mir-342  Mml-Mir-342  Mmr-Mir-342  Mmu-Mir-342  Ocu-Mir-342  Pab-Mir-342  Rno-Mir-342 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 130940190-130940256 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGCAGCCUGUGAAACUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUUAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUGCUUAUCACCACCCUAAACAG
Get precursor sequence
Structure
        10           20        30        40          50        60   
CCAGCAGCCUGUGAAACU---    U        G      UA--|     AU     GACAUGGUU 
                     GGGC CAAGGUGA GGGUGC    UCUGUG  UGAGG         \
                     UCCG GUUCCACU CCCACG    AGACAC  ACUCU         A
GACAAAUCCCACCACUAUUCG    -        G      CUAA^     --     GUUAAGGUA 
     120       110        100        90        80          70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut is supported by CAGE data (de Rie et al. 2017) although there is a second Drosha cut +1 on both arms and a second Dicer cut -4 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-342_5p*
mirBase accessionNone
Sequence 
0- AGGGGUGCUAUCUGUGAUUGAGGGA -25
Get sequence
Mature sequence

Cja-Mir-342_3p
mirBase accessionNone
Sequence 
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence