| MirGeneDB ID | Cpo-Mir-342 |
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| Family name |
MIR-342 (all species) |
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| Seed |
CUCACAC |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-342
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| Paralogues |
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| Orthologues |
Bta-Mir-342
Cfa-Mir-342
Cja-Mir-342
Dno-Mir-342
Eca-Mir-342
Ete-Mir-342
Hsa-Mir-342
Laf-Mir-342
Mml-Mir-342
Mmr-Mir-342
Mmu-Mir-342
Ocu-Mir-342
Pab-Mir-342
Rno-Mir-342
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(cavPor3) |
scaffold_114: 3985857-3985923 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
CCAGCAGCCUGUGGAUCUGGGCCCAAGGUGAGGGGUGCUAUCUGUGCUGGAGGGACAUGAUCAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUGCCGAGCACCGCCAGACCAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCAGCAGCCUGUGGAUCU--- C G UA--| CUGGA UGAUCA
GGG CCAAGGUGA GGGUGC UCUGUG GGGACA \
UCC GGUUCCACU CCCACG AGACAC CUCUGU A
GAACCAGACCGCCACGAGCCG - G CUAA^ A---- UAAGGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There could be an alternative Dicer cut -2 relative to what is annotated here but the number and quality of the reads appear to be poor and thus this gene is annoated based on phylogenetic conservation of the cuts. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-342_5p* |
| mirBase accession | MIMAT0047180 |
|---|
| Sequence |
0- AGGGGUGCUAUCUGUGCUGGAGGGACA -27
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-342_3p |
| mirBase accession | MIMAT0047181 |
|---|
| Sequence |
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence
|
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