MirGeneDB ID | Mmr-Mir-342 |
Family name |
MIR-342 (all species) |
Seed |
CUCACAC |
Species |
Gray mouse lemur (Microcebus murinus) |
MiRBase ID |
mmr-mir-342
|
Paralogues |
|
Orthologues |
Bta-Mir-342
Cfa-Mir-342
Cja-Mir-342
Cpo-Mir-342
Dno-Mir-342
Eca-Mir-342
Ete-Mir-342
Hsa-Mir-342
Laf-Mir-342
Mml-Mir-342
Mmu-Mir-342
Ocu-Mir-342
Pab-Mir-342
Rno-Mir-342
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000165445.3_Mmur_3.0_genomic) |
CM007663.1: 10885935-10886001 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCAAGCCUGCGAAACUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGACAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUACUUAGCACCACCCCAGACAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGCAAGCCUGCGAAAC--- U G UA--| AUUGA UGGACA
UGGGC CAAGGUGA GGGUGC UCUGUG GGGACA \
AUCCG GUUCCACU CCCACG AGACAC CUCUGU A
AACAGACCCCACCACGAUUC - G CUAA^ A---- UAAGGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mmr-Mir-342_5p* |
mirBase accession | None |
Sequence |
0- AGGGGUGCUAUCUGUGAUUGAGGGACA -27
Get sequence
|
Mature sequence |
Mmr-Mir-342_3p |
mirBase accession | MIMAT0049166 |
Sequence |
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence
|