MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-342

Family name MIR-342 (all species)
Seed CUCACAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-342  Cfa-Mir-342  Cja-Mir-342  Cpo-Mir-342  Dno-Mir-342  Eca-Mir-342  Ete-Mir-342  Hsa-Mir-342  Laf-Mir-342  Mml-Mir-342  Mmr-Mir-342  Mmu-Mir-342  Ocu-Mir-342  Rno-Mir-342 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 104535707-104535773 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCCAACCUGUGAAACUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUUAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUACUUAUCACCACCCCAAACAG
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Structure
        10           20        30        40          50        60    
UGGCCAACCUGUGAAAC---     U        G      UA--|     AUUGA      UGGUUA 
                    UGGGC CAAGGUGA GGGUGC    UCUGUG     GGGACA      \
                    AUCCG GUUCCACU CCCACG    AGACAC     CUCUGU      A
GACAAACCCCACCACUAUUC     -        G      CUAA^     A----      UAAGGU 
     120       110        100        90        80            70
Deep sequencing
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CommentThe Drosha cut is supported by CAGE data (de Rie et al. 2017) although there is a second Drosha cut +1 on both arms and a second Dicer cut -4 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-342_5p*
mirBase accessionNone
Sequence 
0- AGGGGUGCUAUCUGUGAUUGAGGGACA -27
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Mature sequence

Pab-Mir-342_3p
mirBase accessionNone
Sequence 
42- UCUCACACAGAAAUCGCACCCGUCA -67
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