MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-342

Family name MIR-342 (all species)
Seed CUCACAC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-342
Paralogues
Orthologues Bta-Mir-342  Cja-Mir-342  Cpo-Mir-342  Dno-Mir-342  Eca-Mir-342  Ete-Mir-342  Hsa-Mir-342  Laf-Mir-342  Mml-Mir-342  Mmr-Mir-342  Mmu-Mir-342  Ocu-Mir-342  Pab-Mir-342  Rno-Mir-342 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr8: 68424654-68424720 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGCAAGCCUGUGAAACUGGGCGCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGCAAAUAGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCCGCCUACCACCACCCCUAAACA
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Structure
        10           20        30        40          50        60   
UCGCAAGCCUGUGAAACU---    G        G      UA--|     AU     GACAUGGCA 
                     GGGC CAAGGUGA GGGUGC    UCUGUG  UGAGG         \
                     CCCG GUUCCACU CCCACG    AGACAC  ACUCU         A
ACAAAUCCCCACCACCAUCCG    -        G      CUAA^     --     GUUAAGAUA 
     120       110        100        90        80          70
Deep sequencing
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CommentThe Drosha cut is supported by CAGE data (de Rie et al. 2017) although there is a second Drosha cut +1 on both the 5p and 3p arms and a second Dicer cut -4 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-342_5p*
mirBase accessionNone
Sequence 
0- AGGGGUGCUAUCUGUGAUUGAGG -23
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Mature sequence

Cfa-Mir-342_3p
mirBase accessionMIMAT0006709
Sequence 
42- UCUCACACAGAAAUCGCACCCGUCA -67
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Proposed targets TargetScanVert: cfa-miR-342
miRDB: MIMAT0006709