| MirGeneDB ID | Eca-Mir-342 |
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| Family name |
MIR-342 (all species) |
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| Seed |
CUCACAC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-342
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| Paralogues |
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| Orthologues |
Bta-Mir-342
Cfa-Mir-342
Cja-Mir-342
Cpo-Mir-342
Dno-Mir-342
Ete-Mir-342
Hsa-Mir-342
Laf-Mir-342
Mml-Mir-342
Mmr-Mir-342
Mmu-Mir-342
Ocu-Mir-342
Pab-Mir-342
Rno-Mir-342
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009171.1: 42491189-42491255 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCCAAGCCUGUGAACCUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGCAAAUAGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCCGCCUACCACCACUAAACAAUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCCCAAGCCUGUGAACCU--- U G UA--| AU GACAUGGCA
GGGC CAAGGUGA GGGUGC UCUGUG UGAGG \
CCCG GUUCCACU CCCACG AGACAC ACUCU A
GUAACAAAUCACCACCAUCCG - G CUAA^ -- GUUAAGAUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-342_5p* |
| mirBase accession | MIMAT0013136 |
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| Sequence |
0- AGGGGUGCUAUCUGUGAUUGAGGGA -25
Get sequence
|
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| Mature sequence |
Eca-Mir-342_3p |
| mirBase accession | MIMAT0013137 |
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| Sequence |
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence
|
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