MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-342

Family name MIR-342 (all species)
Seed CUCACAC
Species Horse (Equus caballus)
MiRBase ID eca-mir-342
Paralogues
Orthologues Bta-Mir-342  Cfa-Mir-342  Cja-Mir-342  Cpo-Mir-342  Dno-Mir-342  Ete-Mir-342  Hsa-Mir-342  Laf-Mir-342  Mml-Mir-342  Mmr-Mir-342  Mmu-Mir-342  Ocu-Mir-342  Pab-Mir-342  Rno-Mir-342 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009171.1: 42491189-42491255 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCAAGCCUGUGAACCUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGCAAAUAGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCCGCCUACCACCACUAAACAAUG
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Structure
        10           20        30        40          50        60   
UCCCAAGCCUGUGAACCU---    U        G      UA--|     AU     GACAUGGCA 
                     GGGC CAAGGUGA GGGUGC    UCUGUG  UGAGG         \
                     CCCG GUUCCACU CCCACG    AGACAC  ACUCU         A
GUAACAAAUCACCACCAUCCG    -        G      CUAA^     --     GUUAAGAUA 
     120       110        100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Star sequence

Eca-Mir-342_5p*
mirBase accessionMIMAT0013136
Sequence 
0- AGGGGUGCUAUCUGUGAUUGAGGGA -25
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Mature sequence

Eca-Mir-342_3p
mirBase accessionMIMAT0013137
Sequence 
42- UCUCACACAGAAAUCGCACCCGUCA -67
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