MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-342

Family name MIR-342 (all species)
Seed CUCACAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-342
Paralogues
Orthologues Bta-Mir-342  Cfa-Mir-342  Cja-Mir-342  Cpo-Mir-342  Dno-Mir-342  Eca-Mir-342  Ete-Mir-342  Hsa-Mir-342  Laf-Mir-342  Mml-Mir-342  Mmr-Mir-342  Mmu-Mir-342  Pab-Mir-342  Rno-Mir-342 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0257: 21272-21336 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUCCACAUGAGAACCUGGGCUCGAGGUGAGGGGUGCUCUCUGUGCGUGAGGGACAUGGCAAUCGAAUUGUCUCACACAGAAAUCGCACCCUCUCCUCGGCCUGCUCAGCACCACGCAGCCUGC
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Structure
        10           20        30         40        50        60   
CUCUCCACAUGAGAACCU---|   U     U     -   CUC      CGUGA      UGGCA 
                     GGGC CGAGG GAGGG GUG   UCUGUG     GGGACA     A
                     UCCG GCUCC CUCCC CGC   AGACAC     CUCUGU     U
CGUCCGACGCACCACGACUCG^   -     U     A   UAA      A----      UAAGC 
   120       110        100        90        80            70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-342_5p* (predicted)

mirBase accessionMIMAT0048388
Sequence
0- AGGGGUGCUCUCUGUGCGUGAGGGACA -27
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Mature sequence

Ocu-Mir-342_3p

mirBase accessionMIMAT0048389
Sequence
41- UCUCACACAGAAAUCGCACCCUCU -65
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