| MirGeneDB ID | Laf-Mir-342 |
|---|---|
| Family name | MIR-342 (all species) |
| Seed | CUCACAC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-342 Cfa-Mir-342 Cja-Mir-342 Cpo-Mir-342 Dno-Mir-342 Eca-Mir-342 Ete-Mir-342 Hsa-Mir-342 Mml-Mir-342 Mmr-Mir-342 Mmu-Mir-342 Ocu-Mir-342 Pab-Mir-342 Rno-Mir-342 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 76482842-76482908 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCUGAAGCCUGCGACCCUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUACAUAGAAUUGUCUCACACAGAAAUCGCACCCGUCUCCUUGGCCUGCUUAGCAACACCCCUCGACAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCUGAAGCCUGCGACCCU--- U U G UA--| AU GACAUGGUA GGGC CAAGG GA GGGUGC UCUGUG UGAGG \ UCCG GUUCC CU CCCACG AGACAC ACUCU C ACAGCUCCCCACAACGAUUCG - U G CUAA^ -- GUUAAGAUA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Laf-Mir-342_5p* |
| mirBase accession | None |
| Sequence |
0- AGGGGUGCUAUCUGUGAUUGAGG -23
Get sequence
|
| Mature sequence | Laf-Mir-342_3p |
| mirBase accession | None |
| Sequence |
42- UCUCACACAGAAAUCGCACCCGUCU -67
Get sequence
|
