MirGeneDB ID | Ete-Mir-342 |
Family name |
MIR-342 (all species) |
Seed |
CUCACAC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-342
Cfa-Mir-342
Cja-Mir-342
Cpo-Mir-342
Dno-Mir-342
Eca-Mir-342
Hsa-Mir-342
Laf-Mir-342
Mml-Mir-342
Mmr-Mir-342
Mmu-Mir-342
Ocu-Mir-342
Pab-Mir-342
Rno-Mir-342
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 83287203-83287269 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUCUCCAGCCGGCAACCUGGGUUCAAGGUGAGGGGUGCUGUCUGUGAUUGAGGGACAUGGUACAUGGAACUGUCUCACACAGAAAUCGCACCCGUCUCCUUGGCCUGCCUAGCAACACCCCGGCACU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUCUCCAGCCGGCAACCU--- U U G UG--| AU GACAUGGUA
GGG UCAAGG GA GGGUGC UCUGUG UGAGG \
UCC GGUUCC CU CCCACG AGACAC ACUCU C
UCACGGCCCCACAACGAUCCG - U G CUAA^ -- GUCAAGGUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-342_5p* |
mirBase accession | None |
Sequence |
0- AGGGGUGCUGUCUGUGAUUGAGG -23
Get sequence
|
Mature sequence |
Ete-Mir-342_3p |
mirBase accession | None |
Sequence |
42- UCUCACACAGAAAUCGCACCCGUCU -67
Get sequence
|