| MirGeneDB ID | Cbr-Mir-305-P3 |
|---|
| Family name |
MIR-305 (all species) |
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| Seed |
UUGUACU |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-2223
|
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| Paralogues |
Cbr-Mir-305-P1
Cbr-Mir-305-P2
|
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| Orthologues |
Aae-Mir-305
Aga-Mir-305
Asu-Mir-305
Bge-Mir-305
Csc-Mir-305
Dan-Mir-305
Dlo-Mir-305
Dma-Mir-305
Dme-Mir-305
Dmo-Mir-305
Dpu-Mir-305
Dsi-Mir-305
Dya-Mir-305
Gpa-Mir-305
Hme-Mir-305
Isc-Mir-305
Tca-Mir-305
Tur-Mir-305
|
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| Node of Origin (locus) |
C. briggsae
|
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| Node of Origin (family) |
Cryptovermes
|
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Genome context
(CB4) |
IV: 15568456-15568536 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCUAUUUCUACUCCAAUAUUUUCGGCAAUUUUUGUACUCAUGUAAGGUGACAAAGAUAGCAAAUUUGACCGUAUCCACGUCAAUUAUCAUGCAUCUUCAUCAGUGCAAGAAUGGCCUUUUUUGGACAUAUUCUGGCAGGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
CCUAUUUCUACUCCAAUAUUUUC--| A C U A AAGAUAGCAAAUUUGACC
GGC AUUUUUGUACU AUG AAGGUG CA \
CCG UAAGAACGUGA UAC UUCUAC GU G
UUGGACGGUCUUAUACAGGUUUUUU^ G C - - ACUAUUAACUGCACCUAU
. 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
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| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Mature sequence |
Cbr-Mir-305-P3_5p |
| mirBase accession | MIMAT0011492 |
|---|
| Sequence |
0- UUUGUACUCAUGUAAGGUGACAAAGA -26
Get sequence
|
|---|
| Star sequence |
Cbr-Mir-305-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
58- AUGCAUCUUCAUCAGUGCAAGAA -81
Get sequence
|
|---|
