MirGeneDB ID | Hme-Mir-305 |
Family name |
MIR-305 (all species) |
Seed |
UUGUACU |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
hme-mir-305
|
Paralogues |
|
Orthologues |
Aae-Mir-305
Aga-Mir-305
Asu-Mir-305
Bge-Mir-305
Cbr-Mir-305-P1
Cbr-Mir-305-P2
Cbr-Mir-305-P3
Cel-Mir-305-P1
Cel-Mir-305-P2
Csc-Mir-305
Dan-Mir-305
Dlo-Mir-305
Dma-Mir-305
Dme-Mir-305
Dmo-Mir-305
Dpu-Mir-305
Dsi-Mir-305
Dya-Mir-305
Gpa-Mir-305
Isc-Mir-305
Lpo-Mir-305-P4
Lpo-Mir-305-P5
Lpo-Mir-305-P6
Lpo-Mir-305-P7
Lpo-Mir-305-P8
Tca-Mir-305
Tur-Mir-305
|
Node of Origin (locus) |
Cryptovermes
|
Node of Origin (family) |
Cryptovermes
|
Genome context (Hmel_1) |
HE669248: 31865-31924 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUGGGGGAGCAUGGUGCCGCCGCACGCCCAUUGUACUUCAUCAGGUGCUCUGGUGAUAAUGGUUCCAGGCGCUUGUUGGAGUACACUUACCGUGUCGGCGGUUUUCGUCGGAAGGCACU
Get precursor sequence
|
Structure | 10 20 30 40 50
CGUGGGGGAGCAUGGUG- -| CCCAU U U UGAUA
CCGCCG CACG UGUACUUCA CAGGUGC CUGG \
GGCGGC GUGC ACAUGAGGU GUUCGCG GACC A
UCACGGAAGGCUGCUUUU U^ CAUUC U - UUGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Hme-Mir-305_5p |
mirBase accession | MIMAT0024974 |
Sequence |
0- AUUGUACUUCAUCAGGUGCUCUGG -24
Get sequence
|
Star sequence |
Hme-Mir-305_3p* |
mirBase accession | None |
Sequence |
37- AGGCGCUUGUUGGAGUACACUUA -60
Get sequence
|