| MirGeneDB ID | Lpo-Mir-305-P7 |
|---|
| Family name |
MIR-305 (all species) |
|---|
| Seed |
UUGUACU |
|---|
| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
|---|
| Paralogues |
Lpo-Mir-305-P4
Lpo-Mir-305-P5
Lpo-Mir-305-P6
Lpo-Mir-305-P8
|
|---|
| Orthologues |
Aae-Mir-305
Aga-Mir-305
Asu-Mir-305
Bge-Mir-305
Csc-Mir-305
Dan-Mir-305
Dlo-Mir-305
Dma-Mir-305
Dme-Mir-305
Dmo-Mir-305
Dpu-Mir-305
Dsi-Mir-305
Dya-Mir-305
Gpa-Mir-305
Hme-Mir-305
Isc-Mir-305
Tca-Mir-305
Tur-Mir-305
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
|---|
| Node of Origin (family) |
Cryptovermes
|
|---|
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013667762.1: 31873-31931 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUUUUAAAAGAAGUCAGUCGCCACCAGUUGAUUGUACUUCAUCAGGUGCUCUGGUGGAUUUGAUCCAGGCAUCUCAUGGAGUGCAACUGAUAAGUGGUACAGUAACGUCCAAGGCUGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUUUAAAAGAAGUCAGUC--| CA GA C U UGGA
GCCAC GUU UUGUACUUCAU AGGUGC CUGG U
UGGUG UAG AACGUGAGGUA UCUACG GACC U
CCGUCGGAACCUGCAAUGACA^ AA UC C - UAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Lpo-Mir-305-P7_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUUGUACUUCAUCAGGUGCUCUGG -24
Get sequence
|
|---|
| Star sequence |
Lpo-Mir-305-P7_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AGGCAUCUCAUGGAGUGCAACUG -59
Get sequence
|
|---|
