MirGeneDB ID | Lpo-Mir-305-P8 |
Family name |
MIR-305 (all species) |
Seed |
UUGUACU |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-305-P4
Lpo-Mir-305-P5
Lpo-Mir-305-P6
Lpo-Mir-305-P7
|
Orthologues |
Aae-Mir-305
Aga-Mir-305
Asu-Mir-305
Bge-Mir-305
Csc-Mir-305
Dan-Mir-305
Dlo-Mir-305
Dma-Mir-305
Dme-Mir-305
Dmo-Mir-305
Dpu-Mir-305
Dsi-Mir-305
Dya-Mir-305
Gpa-Mir-305
Hme-Mir-305
Isc-Mir-305
Tca-Mir-305
Tur-Mir-305
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Cryptovermes
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013670041.1: 93451-93510 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAGCAGACAUUGUUAACUUCCACUGGUUAAUUGUACUUCAUCAGGUGCUCUGGUUGUCUUUAAUCCAGGCAUCUUAUGGAGUGCAACUGAUAAGUGGUUGAAAUCAAUGCAUCAUCGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAGCAGACAUUGUUAACUU--| G A C U UUGUC
CCACU GUUA UUGUACUUCAU AGGUGC CUGG \
GGUGA UAGU AACGUGAGGUA UCUACG GACC U
GUGCUACUACGUAACUAAAGUU^ A C U - UAAUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Lpo-Mir-305-P8_5p |
mirBase accession | None |
Sequence |
0- AUUGUACUUCAUCAGGUGCUCUGG -24
Get sequence
|
Star sequence |
Lpo-Mir-305-P8_3p* |
mirBase accession | None |
Sequence |
37- AGGCAUCUUAUGGAGUGCAACUG -60
Get sequence
|