MirGeneDB ID | Lpo-Mir-305-P6 |
Family name |
MIR-305 (all species) |
Seed |
UUGUACU |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-305-P4
Lpo-Mir-305-P5
Lpo-Mir-305-P7
Lpo-Mir-305-P8
|
Orthologues |
Aae-Mir-305
Aga-Mir-305
Asu-Mir-305
Bge-Mir-305
Csc-Mir-305
Dan-Mir-305
Dlo-Mir-305
Dma-Mir-305
Dme-Mir-305
Dmo-Mir-305
Dpu-Mir-305
Dsi-Mir-305
Dya-Mir-305
Gpa-Mir-305
Hme-Mir-305
Isc-Mir-305
Tca-Mir-305
Tur-Mir-305
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Cryptovermes
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665698.1: 827497-827555 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGUUUGGUUUUCAAAGUCGCCACCAGUUGAUUGUACUUCAUCAGGUGCUCUGGUGAGGUUGUUCCAGGCAUCUUAUGGAGUGCAACUGAUAAGUGGUACUGUAACGUCCAAUGUCACU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGUUUGGUUUUCAAAGUC--| CA GA C U UGAG
GCCAC GUU UUGUACUUCAU AGGUGC CUGG G
UGGUG UAG AACGUGAGGUA UCUACG GACC U
UCACUGUAACCUGCAAUGUCA^ AA UC U - UUGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lpo-Mir-305-P6_5p |
mirBase accession | None |
Sequence |
0- AUUGUACUUCAUCAGGUGCUCUGG -24
Get sequence
|
Star sequence |
Lpo-Mir-305-P6_3p* |
mirBase accession | None |
Sequence |
36- AGGCAUCUUAUGGAGUGCAACUG -59
Get sequence
|