MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Eca-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Laf-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmr-Mir-187  Mmu-Mir-187  Mun-Mir-187  Neu-Mir-187  Oan-Mir-187  Ocu-Mir-187  Pab-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021927.1: 73997662-73997719 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCUCACCAUGACACAGUGUGAGACCUCGGGCUACAACACAGGACCCGGGCGCUGCUCUGACCCCUCGUGUCUUGUGUUGCAGCCGGAGGGACGCAGGUCCGCAGCAGAGCCUGCUC
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Structure
        10           20        30        40        50        
GGGCUCACCAUGACACAG---|   AGA    G    A           C    CGCUGC 
                     UGUG   CCUC GGCU CAACACAGGAC CGGG      U
                     ACGC   GGAG CCGA GUUGUGUUCUG GCUC      C
CUCGUCCGAGACGACGCCUGG^   AG-    G    C           U    CCCAGU 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-187_5p*
mirBase accessionNone
Sequence 
0- GGCUACAACACAGGACCCGGGC -22
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Mature sequence

Cja-Mir-187_3p
mirBase accessionNone
Sequence 
36- UCGUGUCUUGUGUUGCAGCCGG -58
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