MirGeneDB ID | Cja-Mir-187 |
---|---|
Family name | MIR-187 (all species) |
Seed | CGUGUCU |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-187 Ami-Mir-187 Bta-Mir-187 Cfa-Mir-187 Cli-Mir-187 Cpi-Mir-187 Cpo-Mir-187 Dno-Mir-187 Dre-Mir-187 Eca-Mir-187 Ete-Mir-187 Gga-Mir-187 Gja-Mir-187 Gmo-Mir-187 Hsa-Mir-187 Laf-Mir-187 Lch-Mir-187 Loc-Mir-187 Mal-Mir-187 Mdo-Mir-187 Mml-Mir-187 Mmr-Mir-187 Mmu-Mir-187 Mun-Mir-187 Neu-Mir-187 Oan-Mir-187 Ocu-Mir-187 Pab-Mir-187 Rno-Mir-187 Sha-Mir-187 Spt-Mir-187 Tgu-Mir-187 Tni-Mir-187 Xtr-Mir-187 |
Node of Origin (locus) | Osteichthyes |
Node of Origin (family) | Osteichthyes |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021927.1: 73997662-73997719 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GGGCUCACCAUGACACAGUGUGAGACCUCGGGCUACAACACAGGACCCGGGCGCUGCUCUGACCCCUCGUGUCUUGUGUUGCAGCCGGAGGGACGCAGGUCCGCAGCAGAGCCUGCUCGet precursor sequence |
Structure | 10 20 30 40 50 GGGCUCACCAUGACACAG---| AGA G A C CGCUGC UGUG CCUC GGCU CAACACAGGAC CGGG U ACGC GGAG CCGA GUUGUGUUCUG GCUC C CUCGUCCGAGACGACGCCUGG^ AG- G C U CCCAGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Cja-Mir-187_5p* |
mirBase accession | None |
Sequence |
0- GGCUACAACACAGGACCCGGGC -22
Get sequence
|
Mature sequence | Cja-Mir-187_3p |
mirBase accession | None |
Sequence |
36- UCGUGUCUUGUGUUGCAGCCGG -58
Get sequence
|