| MirGeneDB ID | Neu-Mir-187 |
|---|---|
| Family name | MIR-187 (all species) |
| Seed | CGUGUCU |
| Species | Tammar Wallaby (Notamacropus eugenii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-187 Ami-Mir-187 Bta-Mir-187 Cfa-Mir-187 Cja-Mir-187 Cli-Mir-187 Cpi-Mir-187 Cpo-Mir-187 Dno-Mir-187 Dre-Mir-187 Eca-Mir-187 Ete-Mir-187 Gga-Mir-187 Gja-Mir-187 Gmo-Mir-187 Hsa-Mir-187 Laf-Mir-187 Lch-Mir-187 Loc-Mir-187 Mal-Mir-187 Mdo-Mir-187 Mml-Mir-187 Mmr-Mir-187 Mmu-Mir-187 Mun-Mir-187 Oan-Mir-187 Ocu-Mir-187 Pab-Mir-187 Rno-Mir-187 Sha-Mir-187 Spt-Mir-187 Tgu-Mir-187 Tni-Mir-187 Xtr-Mir-187 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051816.1: 341762542-341762599 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAUUUGGCAUCACAUAUUGUGAGACCUCUGGCUACAACACAGGACAUGGGAGCUUUUCUGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGGGCACAUCUUAUCAGCAGAGCCCUGCUGet precursor sequence |
| Structure | 10 20 30 40 50 AGAUUUGGCAUCACAUAU---| AGA A AGCUUU UGUG CCUCUGGCU CAACACAGGACAUGGG U ACAC GGAGACCGA GUUGUGUUCUGUGCUC C UCGUCCCGAGACGACUAUUCU^ GG- C CCAAGU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | There is a second Drosha cut +1 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine. |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Neu-Mir-187_5p* |
| mirBase accession | None |
| Sequence |
0- GGCUACAACACAGGACAUGGGA -22
Get sequence
|
| Mature sequence | Neu-Mir-187_3p |
| mirBase accession | None |
| Sequence |
36- UCGUGUCUUGUGUUGCAGCCAG -58
Get sequence
|
