MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-187
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cja-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Eca-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Hsa-Mir-187  Laf-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmr-Mir-187  Mmu-Mir-187  Mun-Mir-187  Neu-Mir-187  Oan-Mir-187  Ocu-Mir-187  Pab-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig120054: 339-399 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCACCCAUCAGGGUUAGCCCGGGCCGGGGGCUGCAACACAGGACAUGGGACCAGCCUCUCAAACCCCUCGUGUCUUGUGUUGCAGCCAGUGGAACGGUCUGUCUACCUGCCCAUCUACC
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Structure
        10          20        30        40        50          
ACUCACCCAUCAGGGUU--| C   GG   GG                     ACCAGCCU 
                   AG CCG  CCG  GGCUGCAACACAGGACAUGGG        \
                   UC GGC  GGU  CCGACGUUGUGUUCUGUGCUC        C
CCAUCUACCCGUCCAUCUG^ U   AA   GA                     CCCAAACU 
 .       110       100        90        80        70
Deep sequencing
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CommentThe 3' end of the 3p arm is also monouridylated when not monoadenylated despite the templated uridine.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-187_5p*
mirBase accessionMIMAT0044002
Sequence 
0- GGCUGCAACACAGGACAUGGGA -22
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Mature sequence

Gmo-Mir-187_3p
mirBase accessionMIMAT0044003
Sequence 
39- UCGUGUCUUGUGUUGCAGCCAG -61
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