| MirGeneDB ID | Lch-Mir-187 |
|---|---|
| Family name | MIR-187 (all species) |
| Seed | CGUGUCU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-187 Ami-Mir-187 Bta-Mir-187 Cfa-Mir-187 Cja-Mir-187 Cli-Mir-187 Cpi-Mir-187 Cpo-Mir-187 Dno-Mir-187 Dre-Mir-187 Eca-Mir-187 Ete-Mir-187 Gga-Mir-187 Gja-Mir-187 Gmo-Mir-187 Hsa-Mir-187 Laf-Mir-187 Loc-Mir-187 Mal-Mir-187 Mdo-Mir-187 Mml-Mir-187 Mmr-Mir-187 Mmu-Mir-187 Mun-Mir-187 Neu-Mir-187 Oan-Mir-187 Ocu-Mir-187 Pab-Mir-187 Rno-Mir-187 Sha-Mir-187 Spt-Mir-187 Tgu-Mir-187 Tni-Mir-187 Xtr-Mir-187 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (LatCha1_add) |
JH127142.1: 316908-316965 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UGAUAUUCUGUGACAUGUUGCGAUGCCUCGGGCUGCAACACAGGACAUGGGAGCUUAUUGUAACCCUCGUGUCUUGUGUUGCAGCCAGUGGGGUUGCAUCCUACUCUGCACUGAUUGAGet precursor sequence |
| Structure | 10 20 30 40 50 UGAUAUUCUGUGACAUGU--| G UCG AGCUUA UGCGAU CC GGCUGCAACACAGGACAUGGG U ACGUUG GG CCGACGUUGUGUUCUGUGCUC U AGUUAGUCACGUCUCAUCCU^ G UGA CCAAUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-187_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGCUGCAACACAGGACAUGGGA -22
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|
| Mature sequence | Lch-Mir-187_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- UCGUGUCUUGUGUUGCAGCCAG -58
Get sequence
|
