MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-187
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mml-Mir-187  Mmu-Mir-187  Mun-Mir-187  Oan-Mir-187  Ocu-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(monDom5_add)
3: 87606214-87606271 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUUUGUCAUCAUGUAUUGUGAGACCUCUGGCUACAACACAGGACACGGGAGCUUUUCUGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGGGCACAUCUUUGCGGCAGAGCCCCACU
Get precursor sequence
Structure
        10           20        30        40        50        
AGGUUUGUCAUCAUGUAU---|   AGA         A                AGCUUU 
                     UGUG   CCUCUGGCU CAACACAGGACACGGG      U
                     ACAC   GGAGACCGA GUUGUGUUCUGUGCUC      C
UCACCCCGAGACGGCGUUUCU^   GG-         C                CCAAGU 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-187_5p*

mirBase accessionMIMAT0026674
Sequence
0- GGCUACAACACAGGACACGGGA -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-187-5p
Mature sequence

Mdo-Mir-187_3p

mirBase accessionMIMAT0004120
Sequence
36- UCGUGUCUUGUGUUGCAGCCAG -58
Get sequence
Proposed targets TargetScanVert: mdo-miR-187-3p