MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmu-Mir-187  Mun-Mir-187  Oan-Mir-187  Ocu-Mir-187  Rno-Mir-187  Sha-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01013498.1: 7339908-7339965 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCUCCUCUGAUAUAUUGUGAGACCUCCGGCUACAACACAGGACAUGGGAGCUUUUCUGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGGGCACAGCUGAUCAGCCCAGCAAAACC
Get precursor sequence
Structure
        10           20        30        40        50        
GCUUCUCCUCUGAUAUA---|    AGA    C    A                AGCUUU 
                    UUGUG   CCUC GGCU CAACACAGGACAUGGG      U
                    GACAC   GGAG CCGA GUUGUGUUCUGUGCUC      C
CCAAAACGACCCGACUAGUC^    GG-    A    C                CCAAGU 
      110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Spt-Mir-187_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCUACAACACAGGACAUGGGA -22
Get sequence
Mature sequence

Spt-Mir-187_3p (predicted)

mirBase accessionNone
Sequence
36- UCGUGUCUUGUGUUGCAGCCAG -58
Get sequence