MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cja-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Eca-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmr-Mir-187  Mmu-Mir-187  Mun-Mir-187  Neu-Mir-187  Oan-Mir-187  Ocu-Mir-187  Pab-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010031.1: 64566767-64566824 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCUCACCAUGACAUGGUGUGAGACCUCGGGCUACAACACAGGACCCGGGUGCUGCUCUGACCCCUCGUGUCUUGUGUUGCAGCCGGGGGGACACAGGACCGCAGCAGAGCCUGCUC
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Structure
        10           20        30        40        50        
GGGCUCACCAUGACAUGG---|   AGA    G    A           C    UGCUGC 
                     UGUG   CCUC GGCU CAACACAGGAC CGGG      U
                     ACAC   GGGG CCGA GUUGUGUUCUG GCUC      C
CUCGUCCGAGACGACGCCAGG^   AG-    G    C           U    CCCAGU 
      110       100         90        80        70        60
Deep sequencing
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CommentThere is a 1 nt polymorphism at position 20 on the 3p arm.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Star sequence

Laf-Mir-187_5p*
mirBase accessionNone
Sequence 
0- GGCUACAACACAGGACCCGGGU -22
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Mature sequence

Laf-Mir-187_3p
mirBase accessionNone
Sequence 
36- UCGUGUCUUGUGUUGCAGCCGG -58
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