| MirGeneDB ID | Laf-Mir-187 |
|---|---|
| Family name | MIR-187 (all species) |
| Seed | CGUGUCU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-187 Ami-Mir-187 Bta-Mir-187 Cfa-Mir-187 Cja-Mir-187 Cli-Mir-187 Cpi-Mir-187 Cpo-Mir-187 Dno-Mir-187 Dre-Mir-187 Eca-Mir-187 Ete-Mir-187 Gga-Mir-187 Gja-Mir-187 Gmo-Mir-187 Hsa-Mir-187 Lch-Mir-187 Loc-Mir-187 Mal-Mir-187 Mdo-Mir-187 Mml-Mir-187 Mmr-Mir-187 Mmu-Mir-187 Mun-Mir-187 Neu-Mir-187 Oan-Mir-187 Ocu-Mir-187 Pab-Mir-187 Rno-Mir-187 Sha-Mir-187 Spt-Mir-187 Tgu-Mir-187 Tni-Mir-187 Xtr-Mir-187 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010031.1: 64566767-64566824 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGCUCACCAUGACAUGGUGUGAGACCUCGGGCUACAACACAGGACCCGGGUGCUGCUCUGACCCCUCGUGUCUUGUGUUGCAGCCGGGGGGACACAGGACCGCAGCAGAGCCUGCUCGet precursor sequence |
| Structure | 10 20 30 40 50 GGGCUCACCAUGACAUGG---| AGA G A C UGCUGC UGUG CCUC GGCU CAACACAGGAC CGGG U ACAC GGGG CCGA GUUGUGUUCUG GCUC C CUCGUCCGAGACGACGCCAGG^ AG- G C U CCCAGU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | There is a 1 nt polyDcRNAphism at position 20 on the 3p arm. |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Laf-Mir-187_5p* |
| mirBase accession | None |
| Sequence |
0- GGCUACAACACAGGACCCGGGU -22
Get sequence
|
| Mature sequence | Laf-Mir-187_3p |
| mirBase accession | None |
| Sequence |
36- UCGUGUCUUGUGUUGCAGCCGG -58
Get sequence
|
