MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cja-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Eca-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Laf-Mir-187  Lch-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmr-Mir-187  Mmu-Mir-187  Mun-Mir-187  Neu-Mir-187  Oan-Mir-187  Ocu-Mir-187  Pab-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LepOcu1)		 LG11: 21520989-21521048 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUUGAAGGUGACAUGCAGGGGGCCGCAGGCUGCAACACGGGAUAUGGGAGCUGCUCAUUUUACCCUCGUGUCUUGUGUUGCAGCCAGUGGAACUGCUACUCAUUAACGUCGGGAAGC
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Structure
        10            20        30        40        50         
AAGCUUGAAGGUGACAU----|   GGGG    A                     AGCUGCU 
                     GCAG    CCGC GGCUGCAACACGGGAUAUGGG       C
                     CGUC    GGUG CCGACGUUGUGUUCUGUGCUC       A
CGAAGGGCUGCAAUUACUCAU^   AA--    A                     CCAUUUU 
.       110       100          90        80        70        60
Deep sequencing
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CommentThe 3' end of the 3p arm is also monouridylated when not monoadenylated despite the templated uridine.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-187_5p*
mirBase accessionNone
Sequence 
0- GGCUGCAACACGGGAUAUGGGA -22
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Mature sequence

Loc-Mir-187_3p
mirBase accessionNone
Sequence 
38- UCGUGUCUUGUGUUGCAGCCAG -60
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