MirGeneDB ID | Dre-Mir-499-P1 |
Family name |
MIR-499 (all species) |
Seed |
UAAGACU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-499
|
Paralogues |
Dre-Mir-499-P2
|
Orthologues |
Aca-Mir-499
Ami-Mir-499
Bta-Mir-499
Cfa-Mir-499
Cja-Mir-499
Cli-Mir-499
Cpi-Mir-499
Cpo-Mir-499
Dno-Mir-499
Ebu-Mir-499
Eca-Mir-499
Ete-Mir-499
Gga-Mir-499
Gja-Mir-499
Gmo-Mir-499-P1
Hsa-Mir-499
Laf-Mir-499
Lch-Mir-499
Loc-Mir-499
Mal-Mir-499-P1
Mdo-Mir-499
Mml-Mir-499
Mmr-Mir-499
Mmu-Mir-499
Mun-Mir-499
Oan-Mir-499
Ocu-Mir-499
Pab-Mir-499
Pbv-Mir-499
Pma-Mir-499
Rno-Mir-499
Sha-Mir-499
Spt-Mir-499
Sto-Mir-499
Tgu-Mir-499
Tni-Mir-499-P1
Xtr-Mir-499
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (danRer11) |
chr11: 25205169-25205227 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAAACUGUCCAAUACUGAGAGGGAGGCAGUUAAGACUUGCAGUGAUGUUUAGAGAAAUGUCACAUGAACAUCACUUUAAGUCUGUGCUGGCUCCUGUUCUGAGUCUACAAAGUGCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAAACUGUCCAAUACU--| A G UA C GAGAAA
GAG GGGAG CAGU AGACUUG AGUGAUGUUUA \
CUU UCCUC GUCG UCUGAAU UCACUACAAGU U
CUUCGUGAAACAUCUGAGU^ G G UG U ACACUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Dre-Mir-499-P1_5p |
mirBase accession | MIMAT0003749 |
Sequence |
0- UUAAGACUUGCAGUGAUGUUUA -22
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-499
|
Star sequence |
Dre-Mir-499-P1_3p* |
mirBase accession | MIMAT0032009 |
Sequence |
37- AACAUCACUUUAAGUCUGUGCU -59
Get sequence
|